1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccgttaccgtctaatttgagttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGCTTCATCTTAAAGTTCTCCAAG
species | Glycine max |
transcript | GLYMA07G30080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGEST: gi|192319318|gb|FK009860.1|FK009860
genomic: AAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: TCGCCGTCAGCTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGEST: gi|7028830|gb|AW458613.1|AW458613
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGEST: gi|58022562|gb|CX709303.1|CX709303
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGEST: gi|4260445|gb|AI416941.1|AI416941
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGEST: gi|58022278|gb|CX709019.1|CX709019
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
atctacaatctccgcttatcactttccgttaccgtctaatttgagttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGCTTCATCTTAAAGTTCTCCAAG
gtctaat putative branch site (score: 3)
tctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccgttaccgtctaatttgagttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGCTTCATCTTAAAGTTCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT