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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgccatatacggttccgcagctgtttaccttcttgtttttcttcatgcaatgcttcccattttcatactttgttaacacttaattttctgatcccaatctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGCACAGTTGGAAAAATCCCAAG

Basic information

species Glycine max
transcript GLYMA07G29630.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207829325|gb|GD798175.1|GD798175
EST:     CTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTG                         CTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
genomic: CTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTGgttggtgcca ... atctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
EST: gi|23727378|gb|BU761716.1|BU761716
EST:     AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTG                         CTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
genomic: AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTGgttggtgcca ... atctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
EST: gi|16348300|gb|BI973895.1|BI973895
EST:     AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTG                         CTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
genomic: AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTGgttggtgcca ... atctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
EST: gi|192294866|gb|FG987555.1|FG987555
EST:     AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTG                         CTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC
genomic: AAGCTTCACCCATTTTATAAAAGTTACGGTTCGGTTCCGCTGCATTCGTGgttggtgcca ... atctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcccattttcatactttgttaacacttaattttctgatcccaatctcgttagCTTTCTAGCAACACAAAATGAGCGCCATCTCTTTCAGTTCCACCCATTTGCACAGTTGGAAAAATCCCAAG
                                              tctcgtt  CT-rich tract
                     ttaacacttaatttt  TA-rich tract