1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agctgtggggtaggttaattgaagttcgaaagaaactgtgttgtgtgcatgtggatttccctatgtgatgttgagctcaaccgtgttttcttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
species | Glycine max |
transcript | GLYMA07G29500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGACAAG ATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATEST: gi|254328432|gb|GR835397.1|GR835397
genomic: AGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGACAAGgtttgtttct ... ttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCAT
EST: GAGAGAGGTGACAAG ATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCAT
genomic: GAGAGAGGTGACAAGgtttgtttct ... ttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCAT
tgcatgtggatttccctatgtgatgttgagctcaaccgtgttttcttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
ccgtgttttcttct CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgtggggtaggttaattgaagttcgaaagaaactgtgttgtgtgcatgtggatttccctatgtgatgttgagctcaaccgtgttttcttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
agctgtg
- - - -gggtagg
- - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaacc