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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA

Basic information

species Glycine max
transcript GLYMA07G24950.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g50440.1 (Oryza sativa), 3'ss of exon 1
attgccttcatcagtcattgtaagtatttcaattaa--acagctttgaaggatttaatagaacttagatttgaaa-tttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
       |  |  |  |||  |||  |    | ||    ||      |   || || ||   | |  |||  |   |||||| | || | |   || |||||||||| || || || ||| |  | |||||||||||| ||||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||
---attcttttttgggatttcaagcctcatgagtagctgcatacagaacaaatctagtaattcatttattgaattctttactgtgctgagtacatctctgcagTTCCCAGAAACTTTAGACTGCTTGAAGAGCTTGAGCGAGGTGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATATA

upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G090172_T02 (Zea mays), 3'ss of exon 1
attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaat--tggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
 ||   ||||  ||  |   |   | |      | || | || | | | || |  |   |     ||||  |   |||  |  |  ||  ||    |||||||||| || || || ||  |  | ||||| || ||  | ||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||
-ttttgttcacaaga-acaatggatttgaattctgaatacctgttatgcatgttgtgtgataataatttagatcataccttgttctatggtgtcttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGATGATGCTGATGACATATA

upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G022859_T01 (Zea mays), 3'ss of exon 1
attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaat--tggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
 ||   ||||  || ||   | | | |      | || | ||   |   || |      |     ||||  |   |||| |  |  ||   | |  |||||||||| || || || ||  |  | ||||| || ||  | ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||| 
-ttttgttcacaag-cacaatgaatttgaactctgaatatctgctattcatgttgcttgataataatttagatcatactttgttctatggcgttttctgcagTTCCCAGAAACTTTAGGCTGCTAGAAGAACTAGAACGTGGTGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATT

upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G70660.2 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------------------attgccttcatcagtc-attgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccc--------tgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
                                                                     ||||| | | |  ||  |  ||||  ||||  |||| |||| ||   | |      || | | | |  ||||   ||  | |  || |||| |           ||||||||| || || || ||||||||||||||||| || ||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||| || | 
gtaagtctaatccaatttttttttttgattcgattagtctctttgatttggaatctagggttttactttattgcttccttaggtttaaagtaacgattttgattacacagattgcgaagtcactctatatcgttg--ttgatcatttgtatctttgattgattttgtgtggtttgcagTTCCCAGAAACTTTAGATTATTGGAAGAGCTAGAAAGAGGTGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTT

upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 3'ss of exon 1
-attgccttc--atcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactctt-cttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
 | ||   ||  |||  |  |    | ||  |  ||  | | | | || |  ||   ||   | || |    || |||||      ||| |||      || |||||| ||||| || ||||| |||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| || ||
gaatgtgatcggatccatggtctcgattaggt--atatatctgatctgtaaaat--gatttgatttgggggcgatatttataagagcttgattttgtgatgtagTTCCGAGGAACTTTAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTA

upper sequence: GLYMA07G24950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g05630.t01 (Vitis vinifera), 3'ss of exon 1
attgccttcatcagtcattgtaagtatttcaattaaacagc--tttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
 ||  |||    | |  || |   | ||     || |  |   |||||  | ||  ||  |    ||     | || |       ||  | |     ||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
-ttatcttggaaaatt-ttctggttgttgttgctacatggtcttttgagtgcttgcatgcatagcaggagatatatctttgtgattttgtggtcatatgcagTTCCAAGGAATTTCAGATTACTGGAAGAGCTTGAGAGAGGGGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208326056|gb|GE121936.1|GE121936
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298170625|gb|HO019249.1|HO019249
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298164494|gb|HO014139.1|HO014139
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|31473085|gb|CD415113.1|CD415113
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298194253|gb|HO040901.1|HO040901
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|15814266|gb|BI786541.1|BI786541
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208123865|gb|GD922443.1|GD922443
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208178423|gb|GD977788.1|GD977788
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298199013|gb|HO042376.1|HO042376
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|31460508|gb|CD402476.1|CD402476
EST:     CCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192306562|gb|FG997232.1|FG997232
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192297154|gb|FG988250.1|FG988250
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208158799|gb|GD954688.1|GD954688
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|193514832|gb|FK469678.1|FK469678
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298172716|gb|HO019756.1|HO019756
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298185548|gb|HO030761.1|HO030761
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192306561|gb|FG997231.1|FG997231
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192312733|gb|FK005387.1|FK005387
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298182508|gb|HO031243.1|HO031243
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192296212|gb|FG989048.1|FG989048
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|151409397|gb|EV279205.1|EV279205
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|15661899|gb|BI699270.1|BI699270
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298175103|gb|HO014906.1|HO014906
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208267617|gb|GE063740.1|GE063740
EST:     ATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGG-A
genomic: ATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|21993992|gb|BQ785520.1|BQ785520
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192331361|gb|FK021029.1|FK021029
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192312732|gb|FK005386.1|FK005386
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192316474|gb|FK006765.1|FK006765
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298172581|gb|HO019621.1|HO019621
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAATGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192316475|gb|FK006766.1|FK006766
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|21887768|gb|BQ740981.1|BQ740981
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298196851|gb|HO041594.1|HO041594
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
                                    tcttaat  putative branch site (score: 3)
                                              tccctgc  putative PPT
     tttaatagaacttaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- tgccttc