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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagttccaacccttggcaaacatccctggttgaaatccatgaaactcaaatttgaaattcatgacattttttttttaaatccaattttgggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGATGCAGAAATCAGTTGTGGTGGCAGTGGATAGACTTTTCTATCACAAAGT

Basic information

species Glycine max
transcript GLYMA07G19190.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722802|gb|BW669396.1|BW669396
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|298175080|gb|HO018075.1|HO018075
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|22928302|gb|BU545441.1|BU545441
EST:     CGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|298165396|gb|HO011445.1|HO011445
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|298174285|gb|HO017621.1|HO017621
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGCTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|298165210|gb|HO011259.1|HO011259
EST:     CCCGTTTGGAATAATTTCCATCACCTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|6481428|gb|AW200699.1|AW200699
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|192329681|gb|FK023269.1|FK023269
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|209722803|gb|BW669397.1|BW669397
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
EST: gi|209699935|gb|BW652562.1|BW652562
EST:     CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAG                         GTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA
genomic: CCCGTTTGGAATAATTTCCATCACTTTTCGTTGCTTTCGTTTTGTTCGAGgttcgtagtc ... ggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaaatttgaaattcatgacattttttttttaaatccaattttgggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGATGCAGAAATCAGTTGTGGTGGCAGTGGATAGACTTTTCTATCACAAAGT
          aaattcatgacatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caagttccaacccttggcaaacatccctggttgaaatccatgaaactcaaatttgaaattcatgacattttttttttaaatccaattttgggtattgcagGTTGGGAGGAGAAAATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGATGCAGAAATCAGTTGTGGTGGCAGTGGATAGACTTTTCTATCACAAAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - ccaaccc
- - - - - - - - -caaacat
- - - - - - - - - - - - - ctggttg
- - - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatga