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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggccagtaattgaatgagataattacctttatatatgcctttatgggatgcattatgatagtcaatgagtttaacttattacactttgacatgacatagGCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAG

Basic information

species Glycine max
transcript GLYMA07G18210.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18210.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g02260.t01 (Vitis vinifera), 3'ss of exon 1
cggccagtaattgaatgag-ataattacctttatatatgcctttatgggatgcat-tatgatagt-caatgagtttaacttattacactttgacatga--catagGCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAG
     | || |  ||| |  ||  | |  |    | |      ||||  |||    | ||||  |    | | |   ||| |||      ||  ||    ||||||||||| || |  |||| ||||| ||||| ||||| |||||||||||| | |||||||||||  || | || || |||
-----aatactcaaatcaatattgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208254011|gb|GE055989.1|GE055989
EST:     ACTCTCTCCAAGGTTGGGGCGCTATTCTTGCTCATTTGTATGCTCGCAAG                         GCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTG
genomic: ACTCTCTCCAAGGTTGGGGCGCTATTCTTGCTCATTTGTATGCTCGCAAGgtatgctacc ... catgacatagGCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatgcattatgatagtcaatgagtttaacttattacactttgacatgacatagGCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAG
                       agtttaacttatta  TA-rich tract