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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATG

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996461|gb|BM085833.1|BM085833
EST:     TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAA                         GAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
genomic: TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttt ... ttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
EST: gi|254348008|gb|GR854257.1|GR854257
EST:     TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAA                         GAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
genomic: TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttt ... ttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATG
                                        ctttgtt  CT-rich tract
          atttgaat  TA-rich tract