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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatattcaattcacctaaagtttcatttttgttcaccaaattcaacatcttatacaatttcttaaccttttctcgtctgggtctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAACCCACTAAG

Basic information

species Glycine max
transcript GLYMA07G12980.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457646|gb|CD399674.1|CD399674
EST:     CTTCCTACACTAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCTAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|208329550|gb|GE132615.1|GE132615
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31462596|gb|CD404624.1|CD404624
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31306116|gb|CD391319.1|CD391319
EST:     CTTCCTACACCAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCCAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|298171825|gb|HO021417.1|HO021417
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAGGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31457042|gb|CD399070.1|CD399070
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31457464|gb|CD399492.1|CD399492
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|22927863|gb|BU545002.1|BU545002
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|7686605|gb|AW757253.1|AW757253
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31467620|gb|CD409648.1|CD409648
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|15662434|gb|BI699805.1|BI699805
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31474830|gb|CD416858.1|CD416858
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|13480517|gb|BG509860.1|BG509860
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|57575286|gb|CX548261.1|CX548261
EST:     CTTCNTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31465644|gb|CD407672.1|CD407672
EST:     CTTCCTACACATAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|298183238|gb|HO028223.1|HO028223
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|12691356|gb|BG157692.1|BG157692
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|151401940|gb|EV271753.1|EV271753
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31463797|gb|CD405825.1|CD405825
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCTAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|192331547|gb|FK023423.1|FK023423
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31469331|gb|CD411359.1|CD411359
EST:     CTTCCTACACNAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|20448813|gb|BQ252937.1|BQ252937
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|20811574|gb|BQ296052.1|BQ296052
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|10848296|gb|BF070817.1|BF070817
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|27445924|gb|CA953047.1|CA953047
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|192314355|gb|FK008381.1|FK008381
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31471469|gb|CD413497.1|CD413497
EST:     CTTCCTACACGAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCCAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31460814|gb|CD402842.1|CD402842
EST:     TAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         G
genomic: TAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcag-
EST: gi|31460814|gb|CD402842.1|CD402842
EST:     TAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         G
genomic: TAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcag-
EST: gi|192298638|gb|FG990949.1|FG990949
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|209700427|gb|BW664427.1|BW664427
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31469168|gb|CD411196.1|CD411196
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|10844859|gb|BF068055.1|BF068055
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|13789520|gb|BG652111.1|BG652111
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCGGGCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|7639234|gb|AW733561.1|AW733561
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31475239|gb|CD417267.1|CD417267
EST:     CTTCCTACACTAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCCAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|31467937|gb|CD409965.1|CD409965
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|8827741|gb|BE211471.1|BE211471
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|19271181|gb|BM887437.1|BM887437
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
EST: gi|12690107|gb|BG156443.1|BG156443
EST:     CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCAT                         TTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC
genomic: CTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATgtatgtatat ... tctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattcaacatcttatacaatttcttaaccttttctcgtctgggtctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAACCCACTAAG
                       tcttaac  putative branch site (score: 2)
             ttatacaatttcttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtatattcaattcacctaaagtttcatttttgttcaccaaattcaacatcttatacaatttcttaaccttttctcgtctgggtctcatgcagTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAACCCACTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA