1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agcttggatagaatggaactattaagattttactttgctttgaagagttttcatgtgatatattagttgaagacttttttatattaataaaaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTCCTTCGAGAGATAATTCAAACATGGAGGACGTGGAAGAAAACTCAG
species | Glycine max |
transcript | GLYMA07G09270.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTG GTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTEST: gi|5753610|gb|AI960897.1|AI960897
genomic: TTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTGgtgcgtattc ... aaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACT
EST: TTCTTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTG GTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTEST: gi|19452778|gb|BM954188.1|BM954188
genomic: TTCTTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTGgtgcgtattc ... aaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACT
EST: TTCTTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTG GTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTEST: gi|192294070|gb|FG986159.1|FG986159
genomic: TTCTTCACTGTTCTCTCTCTGAGCAAAACCGAGGATCCCTCATAGTATTGgtgcgtattc ... aaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACT
EST: GAGCAAAACCGAGGATCCCTCATAGTATTGGCAG
genomic: GAGCAAAACCGAGGATCCCTCATAGTATT----Ggtgcgtattc ... aaaaagg
agttttcatgtgatatattagttgaagacttttttatattaataaaaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTCCTTCGAGAGATAATTCAAACATGGAGGACGTGGAAGAAAACTCAG
tattaat putative branch site (score: 2)
atatattagttgaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttggatagaatggaactattaagattttactttgctttgaagagttttcatgtgatatattagttgaagacttttttatattaataaaaaaaggcagGTCAAATATTGGCTAATGTGGATGGGGCATTCATCTATGTACAAGCGCACTCCTTCGAGAGATAATTCAAACATGGAGGACGTGGAAGAAAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA