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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccaatcacatcaacatcttcccctgtaaattgtttaatgcatataattttttaaaaacttttcatatgcttaatttttgttttttgggttatttattcagGGAAGCTGAAATGAGGACTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATATCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA

Basic information

species Glycine max
transcript GLYMA07G08660.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08660.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0034g01440.t01 (Vitis vinifera), 3'ss of exon 3
gtaattccaatcacatcaac---atcttcccctgtaaattgtttaatgcatataattttttaaaaacttttcatatgcttaatttttgttttttgggttatttattca--gGGAAGCTGAAATGAGGACTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATATCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA
||||||   ||    | |     | |  |  ||     || |  | |||  || | ||     | ||   | |     ||   |    |||||| ||   |||| |||  | ||||| ||||||||||  ||||| |||||||||||||  |||||||||||||  ||||| || || ||||   | |||||||||||||| | |||||| 
gtaatttttatggttttagttggaacagcatctaatgtttttgcattgctaatcaattagatcataccagttac-catttttctcccatttttttggacttttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGGTACAGCATCATGTCATTGGGCGTCTGCATTGCAGTTTCAGCTTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttaaaaacttttcatatgcttaatttttgttttttgggttatttattcagGGAAGCTGAAATGAGGACTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATATCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA
                      gcttaat  putative branch site (score: 4)
                                              tttattc  putative PPT
     ttaaaaacttttcata  TA-rich tract