1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aataaggacaatgaggagtattttggtaagacctgttttttcgtaaattatcattgattccttatcctgtcaatttgttcatcgcatttattttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
species | Glycine max |
transcript | GLYMA07G08370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGAGCATAAGAAGGAGAAGCTCCAGAACGAACTTAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTACGATGGGATTCAATGATTTTTGAGACEST: gi|9264556|gb|BE352703.1|BE352703
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCACAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|298187192|gb|HO034341.1|HO034341
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATEST: gi|6667021|gb|AW278480.1|AW278480
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGAT
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAGAGCATTAGGATGGGATTCAATGATTGTGGAGACEST: gi|10846757|gb|BF069622.1|BF069622
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAAG ACANACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGANTTTGGAGACEST: gi|16996698|gb|BM086070.1|BM086070
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|8827066|gb|BE210796.1|BE210796
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|5677037|gb|AI938167.1|AI938167
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTEST: gi|15661549|gb|BI698920.1|BI698920
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATT
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|19346061|gb|BM890941.1|BM890941
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|7685795|gb|AW756443.1|AW756443
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACEST: gi|19346011|gb|BM890891.1|BM890891
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
aattatcattgattccttatcctgtcaatttgttcatcgcatttattttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
cattgat putative branch site (score: 4)
tttatttttt putative PPT
atttattttttgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaggacaatgaggagtattttggtaagacctgttttttcgtaaattatcattgattccttatcctgtcaatttgttcatcgcatttattttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGACTTTTACTATGCTCATGGTCAATTGGGGGACGCTTTTAAAAGTTATGTCC
- - - - caatgag
- - - - - - - - - - - - - - - -cctgttt