1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatctgatcatgaaagcgctagcgtgcattctttaccattgatgcaatttcacctttgagatcattgcttttctttaccattttacttttgatctacagAGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
species | Glycine max |
transcript | GLYMA07G07970.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGAGA AGATACCAGAACCTGTAAAAAAGAACCGCCTCAGGTGGATCCCTTGATAGAEST: gi|7028192|gb|AW457975.1|AW457975
genomic: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGAGAgtgagttttt ... tgatctacagAGATACCAGAACCTGTAAAAAAGAAC-GCCTCAGGTGGATCCCTTGATAGA
EST: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGAGA AGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAGEST: gi|298179051|gb|HO024786.1|HO024786
genomic: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGAGAgtgagttttt ... tgatctacagAGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
EST: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGATA AGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
genomic: TGCGGCAGAGGAAACCAAAGCTCTTGTTGTTGTGGAGAAGGAGAATGAGAgtgagttttt ... tgatctacagAGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
caatttcacctttgagatcattgcttttctttaccattttacttttgatctacagAGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
ttttgat putative branch site (score: 4)
cttttctttaccattt CT-rich tract
attttacttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatctgatcatgaaagcgctagcgtgcattctttaccattgatgcaatttcacctttgagatcattgcttttctttaccattttacttttgatctacagAGATACCAGAACCTGTAAAAAAGAACGCCTCAGGTGGATCCCTTGATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA