1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attaattgaaattagaatgagaaatactttatgtttaatttttaatctgtaaccaactagtctttatttttatttttttaataataatcttcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGGTGTAGCCACGGCTATTTGGATCTTTTTTGAGTTGCTTGAATATCACCT
species | Glycine max |
transcript | GLYMA07G06830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|298188195|gb|HO034888.1|HO034888
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAGGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|151403313|gb|EV273123.1|EV273123
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|192325037|gb|FK016163.1|FK016163
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|213603142|gb|DB960433.1|DB960433
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|7924253|gb|AW830279.1|AW830279
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|7924561|gb|AW830587.1|AW830587
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGEST: gi|213592787|gb|DB957831.1|DB957831
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
EST: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAAC CTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
genomic: CCTCTTTGGAAGGGAGAAGCCAGTTCACTCCGTCCTCGGCGGCGGAAAACgtatgactct ... tcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTG
tctgtaaccaactagtctttatttttatttttttaataataatcttcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGGTGTAGCCACGGCTATTTGGATCTTTTTTGAGTTGCTTGAATATCACCT
ttttaat putative branch site (score: 3)
tcttc putative PPT
tagtctttatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattgaaattagaatgagaaatactttatgtttaatttttaatctgtaaccaactagtctttatttttatttttttaataataatcttcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGGTGTAGCCACGGCTATTTGGATCTTTTTTGAGTTGCTTGAATATCACCT
- - - - - - - gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaacta