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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttgaaacgaaggctttgcatgctatgttgctatatggcctatgcatttttttctatggcatgataagtatcaacattgtcttgggttcatattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG

Basic information

species Glycine max
transcript GLYMA07G06590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340071|gb|GR858196.1|GR858196
EST:     GGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGAGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|9203772|gb|BE329996.1|BE329996
EST:     GGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGGAGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|37996752|gb|CF808341.1|CF808341
EST:     AGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: AGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|10844117|gb|BF067454.1|BF067454
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|10847099|gb|BF069865.1|BF069865
EST:     GGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGGAGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|10845936|gb|BF068951.1|BF068951
EST:     GGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGGAGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|15815279|gb|BI787554.1|BI787554
EST:     GAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttttttctatggcatgataagtatcaacattgtcttgggttcatattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG
                                           ttcatattaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtttgaaacgaaggctttgcatgctatgttgctatatggcctatgcatttttttctatggcatgataagtatcaacattgtcttgggttcatattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -gaaacgaa
- - - - - - - - - -gcatgct
- - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - -gcctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg