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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcagaaggacttaactttatggaaggtgaatagattgtctaagtgctatggtgctaggagtaacaaagtattgtttaatttttgctgtacagGATGCTGTGAGTGGTGGAATAAAAGATCCAAAAAGGTAGCTACATTGGAGTTTGATCGAATTCGGAAGTCAATGAGTGTCATTGTTCGTGAACCAAATGG

Basic information

species Glycine max
transcript GLYMA07G05890.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05890.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 1
gttagcagaaggacttaactttatggaaggtgaatagattgtctaagtgctatggtgctaggagtaacaaagtattgtttaatttttgctgtacagGATGCTGTGAGTGGTGGAATAAAAGATCCAAAAAGGTAGCTACATTGGAGTTTGATCGAATTCGGAAGTCAATGAGTGTCATTGTTCGTGAACCAAATGG
      || | |||  ||| ||          ||||   || |    |  ||   |||      |  |||  | ||     ||  |||  | | |||||| ||||| |||||||  |||||||| ||||  || |||||| | |||||||| || ||||| || |||||||||||  | || ||||| || | |||
---gtaagcaagacccaacctt-caatgctctaata---tgccctgttattacaatgc---agctttcaagatcttaacgtatgcttg--gcatagGATGTTGTGAATGGTGGACAAAAAGATCAAAAAGAGTTGCTACACTAGAGTTTGACCGCATTCGCAAATCAATGAGTGTTCTCGTCCGTGAGCCCACTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaagtgctatggtgctaggagtaacaaagtattgtttaatttttgctgtacagGATGCTGTGAGTGGTGGAATAAAAGATCCAAAAAGGTAGCTACATTGGAGTTTGATCGAATTCGGAAGTCAATGAGTGTCATTGTTCGTGAACCAAATGG
                                         tttttgct  CT-rich tract
                       taacaaagtattgttt  TA-rich tract