1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactctctcctttttcttctcattcactatttcctaaatccgccagatgaactcatcttatctcttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG
species | Glycine max |
transcript | GLYMA07G03680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCG AGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTAEST: gi|14126582|gb|BG791020.1|BG791020
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGgtactctctc ... cttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTA
EST: CAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCG AGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTAEST: gi|58024911|gb|CX711652.1|CX711652
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGgtactctctc ... cttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTA
EST: TCAACCCAATCCG AGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTA
genomic: TCAACCCAATCCGgtactctctc ... cttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTA
ctcattcactatttcctaaatccgccagatgaactcatcttatctcttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG
tcctaaa putative branch site (score: 2)
ctcatcttatctcttc putative PPT
actattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctctcctttttcttctcattcactatttcctaaatccgccagatgaactcatcttatctcttcttacagAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT