Sequence
atgc intronic sequence ATGC exonic sequencegttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
Basic information
species | Glycine max |
transcript | GLYMA07G03210.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g74520.1 (Oryza sativa), 3'ss of exon 2
gttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
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---gtttgcttccaatctcctcctcctcctcctttttttcatgtcaggcttacc----acattcctcttctct------atttttta---agGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAG
upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G438673_T02 (Zea mays), 3'ss of exon 2
gttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
| | | | || || || | | ||| | | || | | | || || | ||| |||||| ||||| | |||| |||||||| || ||||| | |||||||||||| ||||| |||||||| ||||
--------------gttgctgctgcttaccctttccatttcttttatggatatcttcctttatcacttaacctcttattcttttct-ttcagGCTTATTTCCAAGCTGAACCCCTTTCCGGCAATGAAGCATCTCGATGTGGCTGGTGGAACAG
upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
gttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
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gtttgaatcttgctgttgtgctcaaatagttatttcaa----atta-tgatgctttg--cttc---tatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208078753|gb|GD876173.1|GD876173EST: CTCATGAATGACCT-ATGAGTGTTGGATTGCATAGATTGTGGAAGGATAG GTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGC
genomic: CTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGgttacaacat ... ttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
ttttctgctc CT-rich tract
tgattatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG