Sequence
atgc intronic sequence ATGC exonic sequence...tacattgctaatactaagcacttgatatggttattgcactcttgagttgatggaaacttaaacggtttaatttgtcttgttttttttctttggaccacagGAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGCCAAAAGCACGCACC
Basic information
species | Glycine max |
transcript | GLYMA07G02930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|111037570|gb|DY577483.1|DY577483EST: CGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATT GAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAG
genomic: CGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcact ... tggaccacagGAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgatggaaacttaaacggtttaatttgtcttgttttttttctttggaccacagGAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGCCAAAAGCACGCACC
gtttaat putative branch site (score: 4)
tttgtcttgttttttt CT-rich tract
tttaatttgtcttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacattgctaatactaagcacttgatatggttattgcactcttgagttgatggaaacttaaacggtttaatttgtcttgttttttttctttggaccacagGAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGCCAAAAGCACGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - -ctaagca
- - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - tgcactc
- - - - - - - - - - - - - - - - - - - - - - -gttgatg