1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaaattatgttaactagtatttcaacatgattctggctgaaccatctaatgtgcactccctaatcaattccttgtccttttgtttgtttctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAA
species | Glycine max |
transcript | GLYMA07G02400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTG CCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCEST: gi|51337876|gb|CO981742.1|CO981742
genomic: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcagtcagt ... ctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGC
EST: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTG CCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCEST: gi|26045718|gb|CA783217.1|CA783217
genomic: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcagtcagt ... ctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGC
EST: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTG CCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCEST: gi|21594228|gb|BQ610093.1|BQ610093
genomic: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcagtcagt ... ctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGC
EST: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTG CCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGC
genomic: TACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcagtcagt ... ctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGC
tctaatgtgcactccctaatcaattccttgtccttttgtttgtttctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAA
ccctaat putative branch site (score: 3)
ttccttgtccttttgt putative PPT
taatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaattatgttaactagtatttcaacatgattctggctgaaccatctaatgtgcactccctaatcaattccttgtccttttgtttgtttctctgtgcagCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - ccatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc