Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccatctttgatctgccattgttcattgagtctctgcgttttgcttaatccgccttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC

Basic information

species Glycine max
transcript GLYMA07G02270.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttccatctttgatctgccattgttcattgagtctctgcgttttgcttaatccgccttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatgacagAGATGGGTGAAGAAGTG---AAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC
            |   ||||    |||||  ||   | || |  | |  ||| |       | |||||       |  |        |  | |  ||||  | |   | | ||||| |||  ||||| || |   |||   |||||||| || ||||||||||||||| | ||||||||||| ||||||||  | |||||||| || || || ||   
------------tagcatctaattttgtttgtt---tttcagtttctctcttcaggaaaagtgtagttaaacgattgagtattccaattttgttctttggctatgtaatttacagAAATGACTGAAGCAGAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGA---

upper sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttccatctttgatctgccat-tgttcattgagtctctgcgttttgcttaatccgccttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC
          ||| ||||   | || |||||| |   ||   |   | |  || ||  |  |  || | | |||  | ||      ||   | ||   ||  | |     |   ||| |||| ||||      |||||||| |||||||| || ||| | ||||||  ||||||| | ||||||||||| |||||||||||  | |||   |  ||
-------ttctctgtgattaacaatctgttcaatttctcaaaggtgtcttttttatttgattagta-tagcttatttttggt----ttgtttatggcatg-ctatgtatgtagGAGAAATGGCTGAAT---CCAAGGTAGTGGTTCCAGAGTCTGTGCTAAAGAAGATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAGATGAAGCTGTAGC

upper sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttccatctttgatctgccattgttcattgagtctctgcgttttgcttaatccgccttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatga--cagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC
                    |  | ||| | | |||||||| |  |   || |   |  ||     ||  |    ||    |  |||   ||||  ||| |  |  | | ||  | || |||| |||       ||||| || |||||||| || |||||||||||| | ||||| |||||||||||||| ||||  ||||||||  |  | |    
--------------------gttagtgt-cgtcgagtctcttctctccactca--tcatctatcgatttatcg--tcgttaatcattgaatctgggttgttgatctgcagGATTCGGAAATGGTTGAGT---CAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAGGAATGGGCTTTGGAGAAGAAGCAGAATGTTG----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191175|gb|HO038654.1|HO038654
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298183073|gb|HO028336.1|HO028336
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|7925315|gb|AW831402.1|AW831402
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213595918|gb|DB955982.1|DB955982
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298191806|gb|HO035888.1|HO035888
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213594462|gb|DB970028.1|DB970028
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|209704639|gb|BW656645.1|BW656645
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|12687947|gb|BG154222.1|BG154222
EST:     ACCCTAGCTCGCTTGCATTCTCACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|151410201|gb|EV280016.1|EV280016
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|192302088|gb|FG995222.1|FG995222
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|209722062|gb|BW659304.1|BW659304
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATGGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213588560|gb|DB957624.1|DB957624
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|8402365|gb|BE057999.1|BE057999
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213617535|gb|DB969247.1|DB969247
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|151394375|gb|EV264246.1|EV264246
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|208326892|gb|GE122884.1|GE122884
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298185258|gb|HO030471.1|HO030471
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|254326340|gb|GR840932.1|GR840932
EST:     CTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: CTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298195571|gb|HO043962.1|HO043962
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|192330146|gb|FK019786.1|FK019786
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAATGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|193430440|gb|FK397320.1|FK397320
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTTCCTAGAATCAGTGTTGAAGAA
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTG-TTCC-AGAATCAGTGTTGAAGAA
EST: gi|298173986|gb|HO017322.1|HO017322
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213616677|gb|DB969187.1|DB969187
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|13181260|gb|BG352600.1|BG352600
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|192317131|gb|FK009760.1|FK009760
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213617865|gb|DB967283.1|DB967283
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298163026|gb|HO011759.1|HO011759
EST:     ACCCTAGTTCGCTTGTAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|151411624|gb|EV281435.1|EV281435
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|5058211|gb|AI736687.1|AI736687
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|213589045|gb|DB973145.1|DB973145
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCC
EST: gi|14258918|gb|BG881835.1|BG881835
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|17401017|gb|BM177799.1|BM177799
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298189027|gb|HO035664.1|HO035664
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298182455|gb|HO031190.1|HO031190
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|6567236|gb|AW234847.1|AW234847
EST:     GTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: GTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|209727903|gb|BW663417.1|BW663417
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298197335|gb|HO044814.1|HO044814
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|9986855|gb|BE660963.1|BE660963
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|105634463|gb|DW247558.1|DW247558
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|193400843|gb|FK368764.1|FK368764
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|209710592|gb|BW665058.1|BW665058
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298188991|gb|HO035716.1|HO035716
EST:     ACCCTAGTTCGCTTGCAGTCACACGAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|151409563|gb|EV279371.1|EV279371
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|254342198|gb|GR853335.1|GR853335
EST:     CCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: CCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|298165624|gb|HO011673.1|HO011673
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
EST: gi|208263589|gb|GE063387.1|GE063387
EST:     ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCG                         AGATGGGTGAAGAAGTGAACGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC
genomic: ACCCTAGTTCGCTTGCAGTCACACAAGAGGCCAATCCTATTCATAGCTCGgtaagttcca ... cgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC
                   agaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttccatctttgatctgccattgttcattgagtctctgcgttttgcttaatccgccttatagttgtttagatctgagaatatttcgtctgatttgattgttcgaatgacagAGATGGGTGAAGAAGTGAAGGTAGTTGTTCCAGAATCAGTGTTGAAGAAGCGCAAGAGGGAGGAGGAATGGGCGTTGGCCAAGAAGCAAGAACTCGATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC