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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagaggaaaagtatatgggaaaaggagattaaatatttcatttcctacctacatgttcatttgcaagacaagaattcagtattaattccacacaaaatattttctatatttcagCAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTGATCCCTCCACAGTATGTTCTTGGATCTTCTTCAATTCCTTTTAATTCTT

Basic information

species Glycine max
transcript GLYMA07G02120.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602541|gb|DB956561.1|DB956561
EST:     AGCCAAAGGCTTGTTTGGTTGCACATACAAGGAAATATCACAAAG                         CAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTG
genomic: AGCCAAAGGCTTGTTTGGTTGCACATACAAGGAAATATCACAAAGgtgaaagagg ... tatatttcagCAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTG
EST: gi|209722357|gb|BW665843.1|BW665843
EST:     AGCCAAAGGCTTGTTTGGTTGCACATACAAGGAAATATCACAAAG                         CAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTG
genomic: AGCCAAAGGCTTGTTTGGTTGCACATACAAGGAAATATCACAAAGgtgaaagagg ... tatatttcagCAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcaagacaagaattcagtattaattccacacaaaatattttctatatttcagCAAATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTCTGATCCCTCCACAGTATGTTCTTGGATCTTCTTCAATTCCTTTTAATTCTT
                    tattaat  putative branch site (score: 2)
                                      tattttct  putative PPT
                              acacaaaatattttct  TA-rich tract