1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cttttgctctaattgaaccttgtaattatgaggcatatatatgcatggtaacttgtcctgctgatacttgtatcctaattttgttctcttatgctgacagATCCAAGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTAGGGCGACGTACTGGTGGAAATTTGA
species | Glycine max |
transcript | GLYMA07G01890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTAGGTTCCTGAGAAG ATCCAAGGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAEST: gi|192326672|gb|FK018514.1|FK018514
genomic: TCCTC-AGGTTCCTGAGAAGgtatgatcct ... atgctgacagATCCAA-GTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAA
EST: CCAATGCCGCTGGGGAAGATGACGCCAATGCTCCTCAGGTTCCTGAGAAG ATCCAAGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAG
genomic: CCAATGCCGCTGGGGAAGATGACGCCAATGCTCCTCAGGTTCCTGAGAAGgtatgatcct ... atgctgacagATCCAAGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAG
tggtaacttgtcctgctgatacttgtatcctaattttgttctcttatgctgacagATCCAAGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTAGGGCGACGTACTGGTGGAAATTTGA
tcctaat putative branch site (score: 2)
ttttgttctcttat CT-rich tract
taattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgctctaattgaaccttgtaattatgaggcatatatatgcatggtaacttgtcctgctgatacttgtatcctaattttgttctcttatgctgacagATCCAAGTGGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTAGGGCGACGTACTGGTGGAAATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
cttttgc
- - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - gcatata
- - - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctga