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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtccttttttgtttattttttaattttaaatttgcaaaatgtatggttttaatgaaatgaataactgagtcttctgtttttcggttttggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCGTAGGATTCCTTTGCACCCCAGAGTGATTCCAGCTC

Basic information

species Glycine max
transcript GLYMA07G01430.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298518|gb|FG989209.1|FG989209
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209703638|gb|BW678299.1|BW678299
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|151399273|gb|EV269144.1|EV269144
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209715118|gb|BW677161.1|BW677161
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209713878|gb|BW684072.1|BW684072
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|192305151|gb|FG993931.1|FG993931
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|151409022|gb|EV278830.1|EV278830
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|20813370|gb|BQ297848.1|BQ297848
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|192303347|gb|FG997419.1|FG997419
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|19938088|gb|BQ081554.1|BQ081554
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209699564|gb|BW683030.1|BW683030
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|213611441|gb|DB972786.1|DB972786
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttaatgaaatgaataactgagtcttctgtttttcggttttggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCGTAGGATTCCTTTGCACCCCAGAGTGATTCCAGCTC
               gaataac  putative branch site (score: 2)
     ttaatgaaatgaataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtccttttttgtttattttttaattttaaatttgcaaaatgtatggttttaatgaaatgaataactgagtcttctgtttttcggttttggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCGTAGGATTCCTTTGCACCCCAGAGTGATTCCAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - tttgcaa
- - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataac