1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtcctttttatatttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCATAGGATTCCTTTGCACCCCAGAGTGATTCCCGCTA
species | Glycine max |
transcript | GLYMA07G01410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG GACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTEST: gi|151399745|gb|EV269616.1|EV269616
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagca ... ggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG GACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagca ... ggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
ttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCATAGGATTCCTTTGCACCCCAGAGTGATTCCCGCTA
gaataac putative branch site (score: 2)
aataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtcctttttatatttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATTGAAGAGGTTCTGCATAGGATTCCTTTGCACCCCAGAGTGATTCCCGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG