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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttacaataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA

Basic information

species Glycine max
transcript GLYMA07G01390.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttacaataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA
|| ||  | | | | | ||||  |   |||   |  | |||   | |  | || | |  || |||   | |  |||    || | |  || | ||||      |||||||| || || | |||  |  | || ||||||||||| ||||||||||| |||||||| ||  | || || ||||| |||| ||||||||| ||||| |  |
gtaagcaaatcagccaccaagactgactttcacttttttca---ttagatatacatttgtt-tgttccaaatgttt----cctttacgttgtccaattg----aaacagGTAAAGGTCTTTGGGTCCATCGCTTATGTTTCTCAGACTTCTTGGATCCAAAGTGGTACCATCCGGGACAATATCCTCTATGGAAAGCCCATGGAAAGTA

upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttacaataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA
|||||||      ||||    ||||||      ||||    |  |||  |||| ||   |  | |   | | |||||| |||||     | | |  |   || ||||||||| |||| | |||  |  | |||||||||||||||||||||||||| |||||||||||  |||| || || || ||||  ||||| |||||||| | ||
gtgagttg-----caaaaccatttagt-----atcat----agatca--tttacaaatttgatttgcta-atttttttttccct-----tctgc--tggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA

upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttac-aataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA
                         ||   |||  |  ||  ||| |   |||||   | | |  | ||    ||||  | | ||   || | |  ||   || ||||||||  ||||||  ||  |  | |||||||||||||| ||||||||||| |||||||||||  |||| || || || |||| |||||| |||||||| | ||
-------------------------gtgagttgcaaaatc--atttagtgttatagatcattta-caaatttgttttactacatgtttttcttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA

upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttac-----aataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA
                                || |  |  ||  |   ||  || |  |  |     |||  ||| | || || || |||| |       |   ||  |||||||| |||| | |||  |  | |||||||||||||||||||||||||| |||||||||||| |||| || || || || | ||||| ||||||||| ||||
--------------------------------gtgagttgcaaagccctttagtattattgatcatctacaaatttgtttcactaaattttttccttctgttggttgtcaacagGTTGATGTATTTGGTTCAATCGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACAATTCGCGACAACATTCTTTATGGAAGGCCAATGGATAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatccttgtgtctaacacttttttgtccctgaaattttacaataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA
                                       caataac  putative branch site (score: 2)
                               aaattttacaataact  TA-rich tract