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...atcctctcttttccttctttacccaaatgcctataatttcaacagtgttaattttatctatattaaaatgttttgctgaattactgtgtttgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATTATGATGATGGTGGGTCACCAAAGAGGAAC
species | Glycine max |
transcript | GLYMA07G01260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAG CGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCEST: gi|10709520|gb|BF009244.1|BF009244
genomic: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGgtaaccgcca ... tgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTC
EST: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAG CGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCEST: gi|209720525|gb|BW675024.1|BW675024
genomic: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGgtaaccgcca ... tgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTC
EST: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAG CGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCEST: gi|13479970|gb|BG509313.1|BG509313
genomic: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGgtaaccgcca ... tgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTC
EST: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAG CGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTC
genomic: CGCTACGACAGCCGCTCCGGCGACCCAACTTCCTATCGTGACCGGAGGAGgtaaccgcca ... tgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTC
tgttaattttatctatattaaaatgttttgctgaattactgtgtttgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATTATGATGATGGTGGGTCACCAAAGAGGAAC
tgttaat putative branch site (score: 3)
tttgttt putative PPT
attttatctatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctctcttttccttctttacccaaatgcctataatttcaacagtgttaattttatctatattaaaatgttttgctgaattactgtgtttgtttgttagCGATTCTGGGCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCAAACAGGAGGGATTATGATGATGGTGGGTCACCAAAGAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-tcctctc
- - - - - - ccttctt
- - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtg