1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttccattgatctgttgtgttttatataattggtttgttaaaagggtgagttatctcagtgactgtaacagaggaataatgacttgatttttgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCCGCAATCCTCCATGGGGTAACTGAGGTTG
species | Glycine max |
transcript | GLYMA07G01190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTC GTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACEST: gi|208240541|gb|GE040981.1|GE040981
genomic: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTCgtaagggacc ... tgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAAC
EST: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTC GTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAAEST: gi|213599219|gb|DB962270.1|DB962270
genomic: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTCgtaagggacc ... tgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAA
EST: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTC GTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAAC
genomic: TAGCTCGTAGAGTAGGATCCTCCATTGCTTCTCCTTCCGCTAAGAATCTCgtaagggacc ... tgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAAC
tgagttatctcagtgactgtaacagaggaataatgacttgatttttgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCCGCAATCCTCCATGGGGTAACTGAGGTTG
ttttt CT-rich tract
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccattgatctgttgtgttttatataattggtttgttaaaagggtgagttatctcagtgactgtaacagaggaataatgacttgatttttgggggacagGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTTGGGGCTCGTGCCGCAATCCTCCATGGGGTAACTGAGGTTG
- - - - -tctgttg
- - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - gggtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg