1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgctttcatggaggagaagcttctgatatttgtgcaaggtattggtgataaatacagtgctcctttaacaacttgtgtctatgttgttatgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAA
species | Glycine max |
transcript | GLYMA07G01000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGEST: gi|193714222|gb|FK655446.1|FK655446
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGEST: gi|22523422|gb|BU082233.1|BU082233
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: GCAAACAACTTCTTCTCTCAGACATGGCATCTCAA GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGEST: gi|38192954|gb|CF922160.1|CF922160
genomic: GCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGEST: gi|13312601|gb|BG406252.1|BG406252
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: TTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: TTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
ggtgataaatacagtgctcctttaacaacttgtgtctatgttgttatgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAA
ctttaac putative branch site (score: 3)
taaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgctttcatggaggagaagcttctgatatttgtgcaaggtattggtgataaatacagtgctcctttaacaacttgtgtctatgttgttatgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG