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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccctacgttacctatctatttcccaacttaatttaattactctctcttctattcttatttgccctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAAGATGGAGAGGAAATCACATACCAAAAAGTCACAAGCGCCGTCAGAAGGG

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614592|gb|DB969141.1|DB969141
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209727472|gb|BW663733.1|BW663733
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209699718|gb|BW652090.1|BW652090
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|33390028|gb|CA853235.1|CA853235
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|33388879|gb|CA852086.1|CA852086
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|207755655|gb|GD728906.1|GD728906
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCC
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCC
EST: gi|209707634|gb|BW683427.1|BW683427
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209724227|gb|BW666592.1|BW666592
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|208192717|gb|GD987570.1|GD987570
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|207733520|gb|GD709552.1|GD709552
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccaacttaatttaattactctctcttctattcttatttgccctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAAGATGGAGAGGAAATCACATACCAAAAAGTCACAAGCGCCGTCAGAAGGG
            atttaat  putative branch site (score: 4)
                  ttactctctcttctat  CT-rich tract
      aacttaatttaattac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccctacgttacctatctatttcccaacttaatttaattactctctcttctattcttatttgccctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAAGATGGAGAGGAAATCACATACCAAAAAGTCACAAGCGCCGTCAGAAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA