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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatatttctttttcttttagtgctagcaattagaatagctgctatagtttcttgaatctttaaagtgcgttagtttttcacatgttgagattttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAG

Basic information

species Glycine max
transcript GLYMA06G47830.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309988|gb|FK002512.1|FK002512
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|209715174|gb|BW665651.1|BW665651
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|10843162|gb|BF066475.1|BF066475
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|207800838|gb|GD775101.1|GD775101
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|209712540|gb|BW684130.1|BW684130
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|10710560|gb|BF010278.1|BF010278
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|10709138|gb|BF008862.1|BF008862
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|254335876|gb|GR847404.1|GR847404
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|208084739|gb|GD882715.1|GD882715
EST:     AAAGGATTTCCCTGCNG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: AAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|151407493|gb|EV277308.1|EV277308
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttcttgaatctttaaagtgcgttagtttttcacatgttgagattttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAG
                                              ttttctt  CT-rich tract
          aatctttaaa  TA-rich tract