1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attaagatggtgaatgagagctgctatgttttttctatgcaataatgcatattaaagatactttggggggtttgttagtaaccaaaaagggttgttatagGATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGAATGACTTCATATGGATTCCTTTTATATGGTCCTGGTTCTTATGCCTGGT
species | Glycine max |
transcript | GLYMA06G44390.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCCACCGTTGGAGGAAAGCAAAGGAGGGCGGTGGCAGTGTTTCTCAG GATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGAEST: gi|209720744|gb|BW657746.1|BW657746
genomic: TCAGCCACCGTTGGAGGAAAGCAAAGGAGGGCGGTGGCAGTGTTTCTCAGgtgagtacaa ... gttgttatagGATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGA
EST: TCAGCCACCGTTGGAGGAAAGCAAAGGAGGGCGGTGGCAGTGTTTCTCAG GATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGA
genomic: TCAGCCACCGTTGGAGGAAAGCAAAGGAGGGCGGTGGCAGTGTTTCTCAGgtgagtacaa ... gttgttatagGATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGA
tgcatattaaagatactttggggggtttgttagtaaccaaaaagggttgttatagGATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGAATGACTTCATATGGATTCCTTTTATATGGTCCTGGTTCTTATGCCTGGT
tagtaac putative branch site (score: 1)
attaaagatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaagatggtgaatgagagctgctatgttttttctatgcaataatgcatattaaagatactttggggggtttgttagtaaccaaaaagggttgttatagGATGAATTGTGGAGATACCTTTCAGACCATGATTGGCTGCGTGCTCTGCGAATGACTTCATATGGATTCCTTTTATATGGTCCTGGTTCTTATGCCTGGT
- - -gatggtg
- - - - - - - - - agctgct
- - - - - - - - - - - - - - - - - ctatgca
- - - - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaaa