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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccctcacttcttcaattttcactttctttacttcctcctcagatttatgatttttttttcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTGTAACCGAAGCTCGTGCCCTTTGGCTAATAGTCGCTATGCCACCATTCGC

Basic information

species Glycine max
transcript GLYMA06G43930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345742|gb|GR859389.1|GR859389
EST:     GGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|21889376|gb|BQ742589.1|BQ742589
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|18690832|gb|BM519680.1|BM519680
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|6502229|gb|AW203602.1|AW203602
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|298185435|gb|HO030648.1|HO030648
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttcactttctttacttcctcctcagatttatgatttttttttcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTGTAACCGAAGCTCGTGCCCTTTGGCTAATAGTCGCTATGCCACCATTCGC
                              tttatgattttttttt  CT-rich tract
                           agatttatgatttttt  TA-rich tract