1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagaacggagtttttgtgatagtgaaatttatttatttgtttattttgagtggataactgtggaacttaattttttgttttgtttttattacttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT
species | Glycine max |
transcript | GLYMA06G42830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAEST: gi|254336114|gb|GR841439.1|GR841439
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAEST: gi|37994754|gb|CF806351.1|CF806351
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAEST: gi|13251903|gb|BG362806.1|BG362806
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGCTATAEST: gi|9565855|gb|BE475364.1|BE475364
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAEST: gi|7692894|gb|AW760993.1|AW760993
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAEST: gi|10237827|gb|BE806715.1|BE806715
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
EST: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTG GGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGGGTTTGA
genomic: CTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttct ... acttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGA
ttgagtggataactgtggaacttaattttttgttttgtttttattacttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT
aacttaattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaacggagtttttgtgatagtgaaatttatttatttgtttattttgagtggataactgtggaacttaattttttgttttgtttttattacttaaaaagGGTGCGTATCGCGATGACCACGGAAAACCTGTGGTTTTGGAATGTGTTAGAGAAGCAGAGAGGAGGGTTGCCGGAAGTCAATTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - - - - - -ttgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - actgtgg