Sequence
atgc intronic sequence ATGC exonic sequence...gaagtgtcaatgacctccattttgttaccatttttgtattgttttagtgtcacaaatttcagttttcgagtttaagagcaataagtttttcacttggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAG
Basic information
species | Glycine max |
transcript | GLYMA06G41530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G41530.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0014g05000.t01 (Vitis vinifera), 3'ss of exon 1
gaagtgtcaatgacctccattttgttaccatttttgtattgttttagtgtcacaaatttcagttttcgagtttaagagca-ataagtttttcact-tggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAG
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tacctttcaattgaaatttttagaattcaattagttcttatttttaagattttggagt--agttttgaatttcagcagctcaccatctattctctgtggtagTTACTGAACTTGTGGAAGGCGACTCATCAAGGAAAATCGTTGAAATAATATGCCGTACAAGTTGGTTGAAATCTGAGAATCATTGTGGCAGAATTGAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207749059|gb|GD720490.1|GD720490EST: ATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTG TGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATA
genomic: ATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTGgtaatacatt ... cacttggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATA
EST:
gi|19269678|gb|BM885934.1|BM885934EST: ATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTG TGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATAT
genomic: ATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTGgtaatacatt ... cacttggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgtcacaaatttcagttttcgagtttaagagcaataagtttttcacttggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAG
tttttcactt CT-rich tract
aataagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtgtcaatgacctccattttgttaccatttttgtattgttttagtgtcacaaatttcagttttcgagtttaagagcaataagtttttcacttggcagTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAG
- - - - - - acctcca
- - - - - - - - - - - tgttacc
- - - - - - - - - - - - - - - - - - - - - - - -tgtcaca