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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaatttaactttatgatagagaatgaaaatggatatttagtttttttttctttgattttttttttctcatattttttttgtttgcatttgtttttgaagCCATGGCATCGTTTGGGGCGGAAGAGTGGTACTTTTTCAGCCCGAGAGAAAGGAAGTACCCGAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTA

Basic information

species Glycine max
transcript GLYMA06G38440.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G38440.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S259_67V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaatttaactttatgatagagaatgaaaatggatatttagtttttttttc---tttgattttttttttctcatattttttttgtttgcatttgtttttgaagCCATGGCATCGTTTGGGGCGGAAGAGTGGTACTTTTTCAGCCCGAGAGAAAGGAAGTACCCGAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTA
 |  || ||    ||   ||||      | ||  | |   |   | | |     ||  |     | |   | | |    |    | |  | ||   |||| || || |||    ||||| |  | ||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||  | || ||| | |||||| |||| || ||
-ttgttgaaa--catagcagagcggcctactgattttccgggaatctgtaaaagttcaagagcgtataaattaaaagaatcgattctctactttgatttgcagGCAAGGCTATTTTTGGAGAAGGAGAGTGGTATTTTTTCAGCCCAAGAGACAGGAAATACCCAAATGGAGCTCGCCCTAACCGAGCTGCAGCTTCCGGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctttgattttttttttctcatattttttttgtttgcatttgtttttgaagCCATGGCATCGTTTGGGGCGGAAGAGTGGTACTTTTTCAGCCCGAGAGAAAGGAAGTACCCGAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTA
     ctttgat  putative branch site (score: 5)
                                          tttgttttt  putative PPT
          attttttttttctcat  TA-rich tract