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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttgtttcttgaacaataataataatcgtttttcttttttgtaatttcttttcatttgagaacaatttgatgtgttttctaagaatttagcattttagGTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGCAACTGAACCTCCAGGGCTTAAACCTAGCAATTTGCTACCATTAGGGAAA

Basic information

species Glycine max
transcript GLYMA06G30030.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716845|gb|BW665483.1|BW665483
EST:     AATTTCAGCTTCCACTTTCCCATGGAATTGAAAAAGGGCAATCTTGTCAG                         GTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGC
genomic: AATTTCAGCTTCCACTTTCCCATGGAATTGAAAAAGGGCAATCTTGTCAGgtattttttc ... agcattttagGTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGC
EST: gi|7685696|gb|AW756344.1|AW756344
EST:     AATTTCAGCTTCCACTTGCCCATGGAATTGAAAAAGGGCAATCTTGTCAG                         GTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGC
genomic: AATTTCAGCTTCCACTTTCCCATGGAATTGAAAAAGGGCAATCTTGTCAGgtattttttc ... agcattttagGTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttttcatttgagaacaatttgatgtgttttctaagaatttagcattttagGTTCTACACGGATGGCAGAAAGCATAAGGATTCGCTTTGGGGAGCAAGAGCAACTGAACCTCCAGGGCTTAAACCTAGCAATTTGCTACCATTAGGGAAA
                     atttgat  putative branch site (score: 5)
                               ttttctaagaattta  TA-rich tract