1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctttgcttctgaatgagtctgaaggttaattatctttgtttgcattatgtgttctgcctgttattgtctaagaaattgataatcctggtaataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTCATTCTTTCCTATCCCTCGAAAAATCAATTTTCGGCTTCGGGCATCGGA
species | Glycine max |
transcript | GLYMA06G23570.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|192311177|gb|FK004488.1|FK004488
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|192311178|gb|FK004489.1|FK004489
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|42723184|gb|CK769083.1|CK769083
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|12774835|gb|BG239701.1|BG239701
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|254334772|gb|GR844557.1|GR844557
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTEST: gi|207716477|gb|GD699463.1|GD699463
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATCEST: gi|151403536|gb|EV273346.1|EV273346
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
EST: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAG ATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
genomic: AGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGgtaagtccct ... ataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATT
tatgtgttctgcctgttattgtctaagaaattgataatcctggtaataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTCATTCTTTCCTATCCCTCGAAAAATCAATTTTCGGCTTCGGGCATCGGA
aattgat putative branch site (score: 4)
taagaaattgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgcttctgaatgagtctgaaggttaattatctttgtttgcattatgtgttctgcctgttattgtctaagaaattgataatcctggtaataattatagATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTCATTCTTTCCTATCCCTCGAAAAATCAATTTTCGGCTTCGGGCATCGGA
- -tgcttct
- - - - - - - gagtctg
- - - - - - - - - - - - - - - - - - - - tgcatta