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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattctccatcgatctcgcaacgcattctccgtttcgacccattaacacatgtttttcttcttctgttatttgtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCGAACATGCGGAATGTCGAGAACGATCTCAAACAAGTTATGATGGCTATGA

Basic information

species Glycine max
transcript GLYMA06G21850.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21850.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ10500 (Selaginella moellendorffii), 3'ss of exon 1
gtttgtattctccatcgatctcgcaacgcattctccgtttcgacccattaacacatgtttttcttcttctgttatttgtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCGAACATGCGGAATGTCGAGAACGATCTCAAACAAGTTATGATGGCTATGA
                        |    ||| |  | || ||    ||    |  |   |  |   |||| | |          || ||||  |  | || ||||| || ||||| || |||||||||||  |||||||||||  |||| | |||||||||||||| |||||  | |||||  || 
---------------------gtgagttgattttgagcttggatt--ttggagctggagctcatagatctggtgt----------agAACAAGATCGGATCGTGGCTTGCCCTCATTTTTTGCGCGCAATCGCTCGCGAACATGAAGAATTTGGAGAACGATCTCAAGCAAGTGGTCATGGCACTGG

upper sequence: GLYMA06G21850.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ19241 (Selaginella moellendorffii), 3'ss of exon 1
gtttgtattctccatcgatctcgcaacgcattctccgtttcgacccattaacacatgtttttcttcttctgttatttgtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCGAACATGCGGAATGTCGAGAACGATCTCAAACAAGTTATGATGGCTATGA
                      |  |   ||| |  | || ||    ||    |  |   |  |   |||| | |          || ||||  |  | || ||||| || ||||| || |||||||||||  |||||||||||  |||| | |||||||||||||| |||||  | |||||  || 
----------------------gtgagtgattttgagcttggatt--ttggagctggagctcatggatctggtgt----------agAACAAGATCGGATCGTGGCTCGCCCTCATTTTTTGCGCGCAATCGCTCGCGAACATGAAGAATTTGGAGAACGATCTCAAGCAAGTGGTCATGGCACTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173354|gb|HO016690.1|HO016690
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|15812582|gb|BI784857.1|BI784857
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298192968|gb|HO033413.1|HO033413
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|207786676|gb|GD757935.1|GD757935
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATT
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATT
EST: gi|298196147|gb|HO044538.1|HO044538
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|254337559|gb|GR845236.1|GR845236
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|192303260|gb|FG997374.1|FG997374
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|16283411|gb|BI945537.1|BI945537
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298187642|gb|HO034791.1|HO034791
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298196721|gb|HO041464.1|HO041464
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298165500|gb|HO011549.1|HO011549
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|120493993|gb|EH222160.1|EH222160
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|26057201|gb|CA800115.1|CA800115
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|17963655|gb|BM270401.1|BM270401
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298181308|gb|HO022747.1|HO022747
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|193431024|gb|FK398198.1|FK398198
EST:     TCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: TCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|207772132|gb|GD743537.1|GD743537
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|26057744|gb|CA800658.1|CA800658
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298166158|gb|HO009129.1|HO009129
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTTGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|51341286|gb|CO982603.1|CO982603
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298175506|gb|HO018217.1|HO018217
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCATG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298178370|gb|HO024105.1|HO024105
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCGTGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|207763808|gb|GD737525.1|GD737525
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATT
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATT
EST: gi|31310657|gb|CD395860.1|CD395860
EST:     GTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: GTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|208333776|gb|GE129593.1|GE129593
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|20075446|gb|BQ094229.1|BQ094229
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCTTT
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298183228|gb|HO028213.1|HO028213
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|17022279|gb|BM093313.1|BM093313
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|298181401|gb|HO022840.1|HO022840
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
EST: gi|8669247|gb|BE190354.1|BE190354
EST:     ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGG                         TACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG
genomic: ACGCCGGCTTCATCGCCGTCATATTTGGCGTCGCCGGCGTCATGTTCAGGgtttgtattc ... gtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgtttcgacccattaacacatgtttttcttcttctgttatttgtgaaatcagTACAAACTGAGCTCTTGGCTGGCGCTCATATTCTGCGCGCAATCCGTCGCGAACATGCGGAATGTCGAGAACGATCTCAAACAAGTTATGATGGCTATGA
             cattaac  putative branch site (score: 2)
                         tttttcttcttctgtt  putative PPT
                      atgttttt  TA-rich tract