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gtatcggcaaatgttaattgttagtttgttagagaatactagtgattgcgattcgaaaacactaacaatgtccgttttaagatgagactcataattaataagtacatgaatagttaattatccgtaattgattgttgtgtgtgtgtgtgtgtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACCCTATGCGGTGCCCTGGAGCGCTTCATTTTTCGGAGAGGAACGACACCG
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|213589222|gb|DB957754.1|DB957754
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|207808150|gb|GD780123.1|GD780123
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: CCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|193701731|gb|FK639541.1|FK639541
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|193499599|gb|FK458384.1|FK458384
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|207796148|gb|GD771415.1|GD771415
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|213614646|gb|DB972858.1|DB972858
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|193525774|gb|FK481181.1|FK481181
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: CGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACEST: gi|213593761|gb|DB957881.1|DB957881
genomic: CGCCCGCATCATGAACAACAACCCCGGCCGCCCCAT-CCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
atgaatagttaattatccgtaattgattgttgtgtgtgtgtgtgtgtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACCCTATGCGGTGCCCTGGAGCGCTTCATTTTTCGGAGAGGAACGACACCG
aattgat putative branch site (score: 4)
tagttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcggcaaatgttaattgttagtttgttagagaatactagtgattgcgattcgaaaacactaacaatgtccgttttaagatgagactcataattaataagtacatgaatagttaattatccgtaattgattgttgtgtgtgtgtgtgtgtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACCCTATGCGGTGCCCTGGAGCGCTTCATTTTTCGGAGAGGAACGACACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA