1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttgtggaggtttcttatatgctttttgattgtgagtatcttcttgtttttaagttagtgattctgtgtttctgattaaatctgaatgtgcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGCTTGTGTCTGAGATAAGTCCAG
species | Glycine max |
transcript | GLYMA06G19590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAG AATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGCEST: gi|213599184|gb|DB958403.1|DB958403
genomic: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAGgtaaaatgac ... gcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGC
EST: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAG AATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGCEST: gi|209716835|gb|BW665473.1|BW665473
genomic: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAGgtaaaatgac ... gcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGC
EST: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAG AATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGC
genomic: GCATACATATCGAAGAAAAGCTCTTGTTGGTTGTTGAGATAGCGAAGAAGgtaaaatgac ... gcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGC
tgtttttaagttagtgattctgtgtttctgattaaatctgaatgtgcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGCTTGTGTCTGAGATAAGTCCAG
ttctgat putative branch site (score: 3)
tgcttct putative PPT
tgattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgtggaggtttcttatatgctttttgattgtgagtatcttcttgtttttaagttagtgattctgtgtttctgattaaatctgaatgtgcttctgtagAATTGGACGATCAAAGATCGTATATGAACAGGCATTCTTGAGATTAATTGCTTGTGTCTGAGATAAGTCCAG
-gttgtgg
- - - - - - - - tatatgc
- - - - - - - - - - - - - - gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt