1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcgtcacattcttaaaactttgcgattctttttctcttcaatttctctgcatttttgtttatctatttatctatttatttacttttgggtctaaggtttaaggtttttttttttttttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTCCCACACTGCTTGCGCCTCAAAACGACGTCGTTGGAGAACTCTCCGCCG
species | Glycine max |
transcript | GLYMA06G17960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|192317518|gb|FK008970.1|FK008970
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|209696468|gb|BW664017.1|BW664017
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|151396982|gb|EV266855.1|EV266855
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACTCAACAATTGAGATCTCACACTGCAATTCATTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|208141894|gb|GD939582.1|GD939582
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|6502012|gb|AW203385.1|AW203385
genomic: GAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: CACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|209722634|gb|BW682710.1|BW682710
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|207685792|gb|GD669124.1|GD669124
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCACGAATCGTTTEST: gi|9440180|gb|BE440690.1|BE440690
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: CACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|17023638|gb|BM094672.1|BM094672
genomic: CACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: TTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|120532998|gb|EH261131.1|EH261131
genomic: TTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|298182845|gb|HO031580.1|HO031580
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|254332573|gb|GR846511.1|GR846511
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: CTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|120533057|gb|EH261190.1|EH261190
genomic: CTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|209710868|gb|BW653629.1|BW653629
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|298181007|gb|HO022446.1|HO022446
genomic: AACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTEST: gi|213599779|gb|DB968429.1|DB968429
genomic: AACTCAACAATTGAGATCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
EST: TCTCACACTGCAATTCCTTCTTCTCCCAGAATCG GTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
genomic: TCTCACACTGCAATTCCTTCTTCTCCCAGAATCGgtgcgtcaca ... tttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTT
ctatttatttacttttgggtctaaggtttaaggtttttttttttttttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTCCCACACTGCTTGCGCCTCAAAACGACGTCGTTGGAGAACTCTCCGCCG
tttttttttttttttc CT-rich tract
tttaaggttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtcacattcttaaaactttgcgattctttttctcttcaatttctctgcatttttgtttatctatttatctatttatttacttttgggtctaaggtttaaggtttttttttttttttcatttagGTCACTAAATCCGCAATCATGAAGCTCGATACCACCGGTCTCGAATCGTTTCCCACACTGCTTGCGCCTCAAAACGACGTCGTTGGAGAACTCTCCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA