1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattaatgggttttggttaaagatccattttttcttattgttttttgaaattcttactgctgctattgtaatccatgttaatgttatgcatattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGT
species | Glycine max |
transcript | GLYMA06G17930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|16106028|gb|BI893768.1|BI893768
genomic: ACTATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|254343730|gb|GR857486.1|GR857486
genomic: CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|192328314|gb|FK020025.1|FK020025
genomic: CTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: GTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|213617811|gb|DB959395.1|DB959395
genomic: GTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: TTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|298194444|gb|HO041092.1|HO041092
genomic: TTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: CTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|18040877|gb|BM309171.1|BM309171
genomic: CTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: TTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|7232756|gb|AW568109.1|AW568109
genomic: TTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: GCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGEST: gi|151403128|gb|EV272938.1|EV272938
genomic: GCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
EST: ATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAG AGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
genomic: ATTTCCGTCTCTCGCTTGTGCTGCCTTCGTTTGCGTTTTTATCACAGgtaagcaagc ... tattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAG
tgaaattcttactgctgctattgtaatccatgttaatgttatgcatattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGT
ttaatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaatgggttttggttaaagatccattttttcttattgttttttgaaattcttactgctgctattgtaatccatgttaatgttatgcatattttgcagAGGAATTAACATATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA