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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccgatacttgttttctcaccctttaataagaaagaaaagaaagttgagtcgttgcctggatttctgtggttttaacttacatagctttcatgttctattttgtgattaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTTATGACTAGGAATCCGGTATTTGTCCTTTCTGAAACTC

Basic information

species Glycine max
transcript GLYMA06G17720.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17720.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtccgatacttgttttctcaccctttaataag--aaagaaaagaaagttgagtcgttgcctggatttctgtggttttaacttacatagctttcatgttctattttgtgattaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTTATGACTAGGAATCCGGTATTTGTCCTTTCTGAAACTC
|| || |    | |  |  |   |     |   |||  ||| |||      |       || ||||||||| | ||| |||| |||   |  |       |||  |||||||  | ||    ||| |||||| ||||||| |||||    ||  |||||||||| || |||||||| |||||||||||||| ||||| ||  | ||||| |||||||| ||||
gtttgacttgaattactagtgagatatactgccaagccaaaaaaacttgcatgctacatttacctggatttttatggcttta-cttgtttcacaaaaccattcccttttgtggctgaa----gGACATAGCAACAAGAGTCATTGCTCGTGAACTTAATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtggttttaacttacatagctttcatgttctattttgtgattaaatacagGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTTATGACTAGGAATCCGGTATTTGTCCTTTCTGAAACTC
             aacttac  putative branch site (score: 2)
                                   tattttgtgattaaat  TA-rich tract