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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccataatatcttattcccctcttgtttctttatcgattaacctaaattgtcgttttttttgtcaccctagggttttcattttgcaattccgctcaattgaggttcttgattagcttcacgttttttttcctgttgatcttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG

Basic information

species Glycine max
transcript GLYMA06G17470.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403796|gb|EV273606.1|EV273606
EST:     CGGAACTCCATATCAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|7028702|gb|AW458485.1|AW458485
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298177912|gb|HO021937.1|HO021937
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGACATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCGGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298189934|gb|HO038337.1|HO038337
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298176063|gb|HO015468.1|HO015468
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298184084|gb|HO029297.1|HO029297
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|4437051|gb|AI522916.1|AI522916
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298189987|gb|HO032108.1|HO032108
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|254313570|gb|GR831199.1|GR831199
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|298180493|gb|HO022046.1|HO022046
EST:     CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTG                         ATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
EST: gi|58022999|gb|CX709740.1|CX709740
EST:     CGGAACTCCATATGAAGGGGGCATTGTCCAGATTGATATCACATTGCATG                         ATGGGTACCCGTTTGAACCCCGCAAGATGCAGTTTAAAACCAAAGTTTG
genomic: CGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGgtaccataat ... cttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattgaggttcttgattagcttcacgttttttttcctgttgatcttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG
                                      tgttgat  putative branch site (score: 4)
                            ttttttttcctgttga  CT-rich tract
                            tttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccataatatcttattcccctcttgtttctttatcgattaacctaaattgtcgttttttttgtcaccctagggttttcattttgcaattccgctcaattgaggttcttgattagcttcacgttttttttcctgttgatcttcttgcagATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG