1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttgcccctttgatgtgaatgtcgtatttttcgcttttattgttggagggtattttgttaaaattgttaactgacgcagttctgttgcatgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGT
species | Glycine max |
transcript | GLYMA06G15510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|213614361|gb|DB966963.1|DB966963
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|298181786|gb|HO025961.1|HO025961
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACGCCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|19271025|gb|BM887281.1|BM887281
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|16284806|gb|BI946280.1|BI946280
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAAACTTGTGCTTGAAGEST: gi|298173478|gb|HO016814.1|HO016814
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|16996720|gb|BM086092.1|BM086092
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|16348135|gb|BI973730.1|BI973730
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|15589927|gb|BI674543.1|BI674543
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|209727965|gb|BW666685.1|BW666685
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|16283929|gb|BI945815.1|BI945815
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGEST: gi|19347243|gb|BM892123.1|BM892123
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
EST: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGG GTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
genomic: ACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAAATGCTCTTCTTCGGgtaccctctc ... tgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAG
ggagggtattttgttaaaattgttaactgacgcagttctgttgcatgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGT
aactgac putative branch site (score: 2)
tattttgttaaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgcccctttgatgtgaatgtcgtatttttcgcttttattgttggagggtattttgttaaaattgttaactgacgcagttctgttgcatgtgacatagGTGGTGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -ccccttt
- - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - tggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc