1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgttttatttttccctctctgaaatgtggagcaggaagagaattttactctatttatagtaatatctgtttatactgatgactggtttttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAGCGTATTGAGGAATTCAGTTAGTGTATTGGAAGATCTAGTTCAACATGT
species | Glycine max |
transcript | GLYMA06G15280.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCAACACAGAAGGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|19453364|gb|BM954774.1|BM954774
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|209708218|gb|BW678588.1|BW678588
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|209723755|gb|BW665678.1|BW665678
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|11274442|gb|BF324795.1|BF324795
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|192303798|gb|FG998696.1|FG998696
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|151396657|gb|EV266530.1|EV266530
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|213594381|gb|DB970003.1|DB970003
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAEST: gi|151413064|gb|EV282872.1|EV282872
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
EST: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACG ATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
genomic: AGCCAACACAGAAAGCACAGAACCACCACATCGTTGCCTTCCTCTAAACGgtgcgtcgtt ... ttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCA
tttactctatttatagtaatatctgtttatactgatgactggtttttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAGCGTATTGAGGAATTCAGTTAGTGTATTGGAAGATCTAGTTCAACATGT
tactgat putative branch site (score: 2)
tttttctgt putative PPT
tatttatagtaatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttttatttttccctctctgaaatgtggagcaggaagagaattttactctatttatagtaatatctgtttatactgatgactggtttttctgtacagATAAATTTTTGGGATTCTGAAACTAGTGATACATTTTCTTGCATGAAGGCAGCGTATTGAGGAATTCAGTTAGTGTATTGGAAGATCTAGTTCAACATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - ttccctc
- - - - - - - - - - - - - tgtggag
- - - - - - - - - - - - - - - - - - gaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgac