1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcaattagcttcaattttattacgaatcgtgattttttcaaaagaactgttccctaaccaacttagcttcattggtcaattgtattttgcaatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG
species | Glycine max |
transcript | GLYMA06G15180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAG ATGGCAAGGACCCAAAAAAGCAAGGCTACTGCTCACCATTTGGGCTTGCTGEST: gi|6454220|gb|AW184833.1|AW184833
genomic: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAGgtacttgttc ... caatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTG
EST: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAG ATGGCAAGGACCCNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTGEST: gi|192294592|gb|FG986441.1|FG986441
genomic: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAGgtacttgttc ... caatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTG
EST: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAG ATGGCAAGGACCCNNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTEST: gi|254325516|gb|GR838397.1|GR838397
genomic: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAGgtacttgttc ... caatttgcagATGGCAAGGACCC-AAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCT
EST: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAG ATGGCAAGGACCCNNNNNNNCAAGGCTACTGCTCATCATTTGGGCTTGCTG
genomic: CTTCCAAAATGGCGACGGTGATGCAAAAAATCAAAGACATCGAAGATGAGgtacttgttc ... caatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTG
aactgttccctaaccaacttagcttcattggtcaattgtattttgcaatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG
ccctaac putative branch site (score: 2)
aattgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaattagcttcaattttattacgaatcgtgattttttcaaaagaactgttccctaaccaacttagcttcattggtcaattgtattttgcaatttgcagATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG