Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctgatcctgctgttttgatgttttcttctcgttgtcgtaattcgtgtgctgtctggttcgctttctgatgttttgaaatcgggaatgcttcttttttgttttggtttggtttttcagGTTTTGGAGCATACGACAAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGGACGGTGGGCGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGT

Basic information

species Glycine max
transcript GLYMA06G14970.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567115|gb|AW234742.1|AW234742
EST:     GTTCCGCTGTCGGCGTCTAGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGG                         GTTTTGGAGCATACGACAAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTG
genomic: GTTCCGCTGTCGGCGTCTAGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGGgtatggctga ... ggtttttcagGTTTTGGAGCATACGACAAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgatgttttgaaatcgggaatgcttcttttttgttttggtttggtttttcagGTTTTGGAGCATACGACAAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGGACGGTGGGCGCGTTGACTCTTTCTGTGGTCTCATCTGTGTCCATTGT
 ttctgat  putative branch site (score: 3)
                                               tttttc  putative PPT
                          ttcttttttgtttt  TA-rich tract