1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcttatgcctctttgagtttgacgctttcattttgtggttctgtttgggaaatagttttgaatgggccttttggttgctaatgctatttatttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAGTGGTGGACAGAACACCATGAACGGT
species | Glycine max |
transcript | GLYMA06G14750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAG TTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAEST: gi|298177051|gb|HO023412.1|HO023412
genomic: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGgtacacctag ... tttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAA
EST: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCCTGCGAAG TTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAEST: gi|151406198|gb|EV276013.1|EV276013
genomic: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGgtacacctag ... tttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAA
EST: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAG TTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAEST: gi|192299552|gb|FG992580.1|FG992580
genomic: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGgtacacctag ... tttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAA
EST: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAG TTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAA
genomic: TATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGgtacacctag ... tttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAA
tgggaaatagttttgaatgggccttttggttgctaatgctatttatttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAGTGGTGGACAGAACACCATGAACGGT
tgctaat putative branch site (score: 2)
tttattt putative PPT
taatgctatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttatgcctctttgagtttgacgctttcattttgtggttctgtttgggaaatagttttgaatgggccttttggttgctaatgctatttatttgctgcagTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAATTATTGGGCTTAACAAGTGGTGGACAGAACACCATGAACGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - -tgcctct
- - - - - - - gagtttg
- - - - - - - - - - - -gctttca
- - - - - - - - - - - - - - - - - - ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt