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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccccccatttccattcttttttctactttactttatctcttattcgcttccacgatcttttttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAAACCGAAGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACG

Basic information

species Glycine max
transcript GLYMA06G14260.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408608|gb|EV278416.1|EV278416
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|7924488|gb|AW830514.1|AW830514
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|151396271|gb|EV266148.1|EV266148
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|298174693|gb|HO014724.1|HO014724
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|193346594|gb|FK313432.1|FK313432
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|298198631|gb|HO040170.1|HO040170
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|193608297|gb|FK555278.1|FK555278
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GGAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|17401291|gb|BM178073.1|BM178073
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|298184967|gb|HO030180.1|HO030180
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|33388223|gb|CA851430.1|CA851430
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|26043669|gb|CA782121.1|CA782121
EST:     AAANTCCCTCCGNCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|192334785|gb|FK025276.1|FK025276
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|192293893|gb|FG986102.1|FG986102
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|15201639|gb|BI424979.1|BI424979
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|298192560|gb|HO036642.1|HO036642
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
EST: gi|33389448|gb|CA852655.1|CA852655
EST:     AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAG                         GAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA
genomic: AAATTCCCTCCGTCGACGACGCAATCCTCAAGAAGAAAGCTCACCCCCAGgttcccccca ... tttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttctactttactttatctcttattcgcttccacgatcttttttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAAACCGAAGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACG
                               cttccacgatcttttt  CT-rich tract
                                       atctttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttccccccatttccattcttttttctactttactttatctcttattcgcttccacgatcttttttttctcagGAAGATGACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAAACCGAAGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG